The compact genome of Caenorhabditis niphades n. sp., isolated from a wood-boring weevil, Niphades variegatus

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dc.authoridSun, Simo/0000-0003-0481-0468
dc.contributor.authorSun, Simo
dc.contributor.authorKanzaki, Natsumi
dc.contributor.authorDayı, Mehmet
dc.contributor.authorMaeda, Yasunobu
dc.contributor.authorYoshida, Akemi
dc.contributor.authorTanaka, Ryusei
dc.contributor.authorKikuchi, Taisei
dc.date.accessioned2023-07-26T11:50:48Z
dc.date.available2023-07-26T11:50:48Z
dc.date.issued2022
dc.departmentDÜ, Ormancılık Meslek Yüksekokulu, Ormancılık Bölümüen_US
dc.description.abstractBackground The first metazoan genome sequenced, that of Caenorhabditis elegans, has motivated animal genome evolution studies. To date > 50 species from the genus Caenorhabditis have been sequenced, allowing research on genome variation. Results In the present study, we describe a new gonochoristic species, Caenorhabditis niphades n. sp., previously referred as C. sp. 36, isolated from adult weevils (Niphades variegatus), with whom they appear to be tightly associated during its life cycle. Along with a species description, we sequenced the genome of C. niphades n. sp. and produced a chromosome-level assembly. A genome comparison highlighted that C. niphades n. sp. has the smallest genome (59 Mbp) so far sequenced in the Elegans supergroup, despite being closely related to a species with an exceptionally large genome, C. japonica. Conclusions The compact genome of C. niphades n. sp. can serve as a key resource for comparative evolutionary studies of genome and gene number expansions in Caenorhabditis species.en_US
dc.description.sponsorshipJapan Society for the Promotion of Science (JSPS) KAKENHI [19H03212, 17KT0013]; JST CREST [JPMJCR18S7]en_US
dc.description.sponsorshipTK was funded by Japan Society for the Promotion of Science (JSPS) KAKENHI Grant Numbers 19H03212 and 17KT0013, and JST CREST Grant Number JPMJCR18S7.en_US
dc.identifier.doi10.1186/s12864-022-09011-8
dc.identifier.issn1471-2164
dc.identifier.issue1en_US
dc.identifier.pmid36418933en_US
dc.identifier.scopus2-s2.0-85142343714en_US
dc.identifier.scopusqualityQ1en_US
dc.identifier.urihttps://doi.org/10.1186/s12864-022-09011-8
dc.identifier.urihttps://hdl.handle.net/20.500.12684/12431
dc.identifier.volume23en_US
dc.identifier.wosWOS:000886994200001en_US
dc.identifier.wosqualityQ1en_US
dc.indekslendigikaynakWeb of Scienceen_US
dc.indekslendigikaynakPubMeden_US
dc.indekslendigikaynakScopusen_US
dc.institutionauthorDayı, Mehmet
dc.language.isoenen_US
dc.publisherBmcen_US
dc.relation.ispartofBmc Genomicsen_US
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanıen_US
dc.rightsinfo:eu-repo/semantics/openAccessen_US
dc.snmz$2023V1Guncelleme$en_US
dc.subjectC; Elegans; Chromosomal Level Assembly; Small-Genome Size; Insect-Associateden_US
dc.subjectRhabditidae; Geneticsen_US
dc.titleThe compact genome of Caenorhabditis niphades n. sp., isolated from a wood-boring weevil, Niphades variegatusen_US
dc.typeArticleen_US

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