Syntenic relationship of chromosomes in Strongyloides species and Rhabditophanes diutinus based on the chromosome-level genome assemblies

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dc.authoridDAYI, Mehmet/0000-0002-5367-918Xen_US
dc.authoridSun, Simo/0000-0003-0481-0468en_US
dc.authoridHunt, Vicky/0000-0002-7094-044Xen_US
dc.authoridKikuchi, Taisei/0000-0003-2759-9167en_US
dc.authorscopusid57208491936en_US
dc.authorscopusid57190275437en_US
dc.authorscopusid57203399650en_US
dc.authorscopusid53984165500en_US
dc.authorscopusid57201384095en_US
dc.authorscopusid7201552245en_US
dc.authorscopusid42761477500en_US
dc.authorwosidDAYI, Mehmet/GQP-8056-2022en_US
dc.authorwosidSun, Simo/HZH-3379-2023en_US
dc.contributor.authorKounosu, Asuka
dc.contributor.authorSun, Simo
dc.contributor.authorMaeda, Yasunobu
dc.contributor.authorDayi, Mehmet
dc.contributor.authorYoshida, Akemi
dc.contributor.authorMaruyama, Haruhiko
dc.contributor.authorHunt, Vicky
dc.date.accessioned2024-08-23T16:04:18Z
dc.date.available2024-08-23T16:04:18Z
dc.date.issued2024en_US
dc.departmentDüzce Üniversitesien_US
dc.description.abstractThe Strongyloides clade, to which the parasitic nematode genus Strongyloides belongs, contains taxa with diverse lifestyles, ranging from free-living to obligate vertebrate parasites. Reproductive strategies are also diverse in this group of nematodes, employing not only sexual reproduction but also parthenogenesis, making it an attractive group to study genome adaptation to specific conditions. An in-depth understanding of genome evolution, however, has been hampered by fragmented genome assemblies. In this study, we generated chromosome-level genome assemblies for two Strongyloides species and the outgroup species Rhabditophanes diutinus using long-read sequencing and high-throughput chromosome conformation capture (Hi-C). Our synteny analyses revealed a clearer picture of chromosome evolution in this group, suggesting that a functional sex chromosome has been maintained throughout the group. We further investigated sex chromosome dynamics in the lifecycle of Strongyloides ratti and found that bivalent formation in oocytes appears to be important for male production in the mitotic parthenogenesis.This article is part of the Theo Murphy meeting issue 'Strongyloides: omics to worm-free populations'.en_US
dc.description.sponsorshipJapan Society for the Promotion of Scienceen_US
dc.description.sponsorshipGenome data analyses were performed using the DDBJ supercomputer system. We thank Masaya Ono and Eddy Sukmawinata for assistance and comments.en_US
dc.identifier.doi10.1098/rstb.2022.0446
dc.identifier.issn0962-8436
dc.identifier.issn1471-2970
dc.identifier.issue1894en_US
dc.identifier.pmid38008120en_US
dc.identifier.scopus2-s2.0-85177752300en_US
dc.identifier.scopusqualityQ1en_US
dc.identifier.urihttps://doi.org/10.1098/rstb.2022.0446
dc.identifier.urihttps://hdl.handle.net/20.500.12684/14156
dc.identifier.volume379en_US
dc.identifier.wosWOS:001124260400006en_US
dc.identifier.wosqualityN/Aen_US
dc.indekslendigikaynakWeb of Scienceen_US
dc.indekslendigikaynakScopusen_US
dc.indekslendigikaynakPubMeden_US
dc.language.isoenen_US
dc.publisherRoyal Socen_US
dc.relation.ispartofPhilosophical Transactions of the Royal Society B-Biological Sciencesen_US
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanıen_US
dc.rightsinfo:eu-repo/semantics/openAccessen_US
dc.subjectStrongyloides rattien_US
dc.subjectHi-Cen_US
dc.subjectparthenogenesisen_US
dc.subjectsex determinationen_US
dc.subjectsex chromosome evolutionen_US
dc.subjectEnvironmental Sex Determinationen_US
dc.subjectChromatin Diminutionen_US
dc.subjectX-Chromosomeen_US
dc.subjectReproductionen_US
dc.subjectEvolutionen_US
dc.subjectGametogenesisen_US
dc.subjectComplementen_US
dc.subjectProvidesen_US
dc.subjectNematodaen_US
dc.subjectRattien_US
dc.titleSyntenic relationship of chromosomes in Strongyloides species and Rhabditophanes diutinus based on the chromosome-level genome assembliesen_US
dc.typeArticleen_US

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