Genome-wide identification and expression profiling of EIL gene family in woody plant representative poplar (Populus trichocarpa)

Basit Öğe Kaydı
dc.contributor.authorFiliz, Ertuğrul
dc.contributor.authorVatansever, Recep
dc.contributor.authorÖzyiğit, İbrahim İlker
dc.contributor.authorUras, Mehmet Emin
dc.contributor.authorŞen, Uğur
dc.contributor.authorAnjum, Naser A.
dc.contributor.authorPereira, Eduarda
dc.date.accessioned2020-05-01T12:10:14Z
dc.date.available2020-05-01T12:10:14Z
dc.date.issued2017
dc.departmentDÜ, Çilimli Meslek Yüksekokulu, Bitkisel ve Hayvansal Üretim Bölümüen_US
dc.descriptionAnjum, Naser A./0000-0001-9953-0703; Ozyigit, Ibrahim Ilker/0000-0002-0825-5951; Pereira, Eduarda/0000-0002-6046-5243en_US
dc.descriptionWOS: 000405977700004en_US
dc.descriptionPubMed: 28625764en_US
dc.description.abstractThis study aimed to improve current understanding on ethylene-insensitive 3-like (EIL) members, least explored in woody plants such as poplar (Populus trichocarpa Torr. & Grey). Herein, seven putative EIL members were identified in P. trichocarpa genome and were roughly annotated either as EIN3-like sequence associated with ethylene pathway or EIL3-like sequences related with sulfur (S)-pathway. Motif-distribution pattern of proteins also corroborated this annotation. They were distributed on six chromosomes (chrl, 3, 4 and 8-10), and were revealed to encode a protein of 509-662 residues with nuclear localization. The presence of ethylene insensitive 3 (EIN3; PF04873) domain (covering first 80 280 residues from N-terminus) was confirmed by Hidden Markov Model-based search. The first half of EIL proteins (similar to 80-280 residues including EIN3 domain) was substantially conserved. The second half (-300-600 residues) was considerably diverged. Additionally, first half of proteins harbored acidic, praline-rich and glutamine-rich sites, and supported the essentiality of these regions in the transcriptional-activation and protein-function. Moreover, identified six segmental and one-tandem duplications demonstrated the negative or purifying selective nature of mutations. Furthermore, expression profile analysis indicated the possibility of a crosstalk between EIN3-and EIL3-like genes, and co-expression networks implicated their interactions with very diverse panels of biological molecules. (C) 2017 Elsevier Inc. All rights reserved.en_US
dc.description.sponsorshipFCT (Government of Portugal)Portuguese Foundation for Science and Technology; Aveiro University Research Institute/CESAM [UID/AMB/50017/2013]; COMPETE [FCOMP-01-0124-FEDER-02800, FCT PTDC/AGR-PRO/4091/2012]en_US
dc.description.sponsorshipNAA (SFRH/BPD/84671/2012) and EP gratefully acknowledge the partial financial supports received from FCT (Government of Portugal) through contract, the Aveiro University Research Institute/CESAM (UID/AMB/50017/2013), and "COMPETE" through Project no. FCOMP-01-0124-FEDER-02800 (FCT PTDC/AGR-PRO/4091/2012).en_US
dc.identifier.doi10.1016/j.abb.2017.06.012en_US
dc.identifier.endpage45en_US
dc.identifier.issn0003-9861
dc.identifier.issn1096-0384
dc.identifier.scopusqualityQ1en_US
dc.identifier.startpage30en_US
dc.identifier.urihttps://doi.org/10.1016/j.abb.2017.06.012
dc.identifier.urihttps://hdl.handle.net/20.500.12684/6091
dc.identifier.volume627en_US
dc.identifier.wosWOS:000405977700004en_US
dc.identifier.wosqualityQ2en_US
dc.indekslendigikaynakWeb of Scienceen_US
dc.indekslendigikaynakPubMeden_US
dc.indekslendigikaynakScopusen_US
dc.language.isoenen_US
dc.publisherElsevier Science Incen_US
dc.relation.ispartofArchives Of Biochemistry And Biophysicsen_US
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanıen_US
dc.rightsinfo:eu-repo/semantics/closedAccessen_US
dc.subjectEthyleneen_US
dc.subjectSulfuren_US
dc.subjectPhytohormoneen_US
dc.subjectPoplaren_US
dc.subjectSLIM1en_US
dc.subjectTranscription factoren_US
dc.titleGenome-wide identification and expression profiling of EIL gene family in woody plant representative poplar (Populus trichocarpa)en_US
dc.typeArticleen_US

Dosyalar

Orijinal paket
Listeleniyor 1 - 1 / 1
Küçük Resim Yok
İsim:
6091.pdf
Boyut:
5.54 MB
Biçim:
Adobe Portable Document Format
Açıklama:
Tam Metin / Full Text
İndir

Koleksiyon

WoS İndeksli Yayınlar Koleksiyonu
Makale Koleksiyonu
PubMed İndeksli Yayınlar Koleksiyonu
Scopus İndeksli Yayınlar Koleksiyonu