Investigation and Computational Analysis of the Sulfotransferase (SOT) Gene Family in Potato (Solanum tuberosum): Insights into Sulfur Adjustment for Proper Development and Stimuli Responses

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dc.authorid, Abdullah/0000-0003-1628-8478
dc.authoridHeidari, Parviz/0000-0003-4716-0143
dc.authoridFiliz, Ertuğrul/0000-0001-9636-6389
dc.authorwosid, Abdullah/AAC-3819-2020
dc.authorwosidHeidari, Parviz/F-8199-2016
dc.authorwosidFiliz, Ertuğrul/I-9440-2016
dc.contributor.authorFaraji, Sahar
dc.contributor.authorHeidari, Parviz
dc.contributor.authorAmouei, Hoorieh
dc.contributor.authorFiliz, Ertuğrul
dc.contributor.authorPoczai, Peter
dc.date.accessioned2023-07-26T11:54:00Z
dc.date.available2023-07-26T11:54:00Z
dc.date.issued2021
dc.departmentDÜ, Meslek Yüksekokulu, Bitkisel ve Hayvansal Üretim Bölümüen_US
dc.description.abstractVarious kinds of primary metabolisms in plants are modulated through sulfate metabolism, and sulfotransferases (SOTs), which are engaged in sulfur metabolism, catalyze sulfonation reactions. In this study, a genome-wide approach was utilized for the recognition and characterization of SOT family genes in the significant nutritional crop potato (Solanum tuberosum L.). Twenty-nine putative StSOT genes were identified in the potato genome and were mapped onto the nine S. tuberosum chromosomes. The protein motifs structure revealed two highly conserved 5 '-phosphosulfate-binding (5 ' PSB) regions and a 3 '-phosphate-binding (3 ' PB) motif that are essential for sulfotransferase activities. The protein-protein interaction networks also revealed an interesting interaction between SOTs and other proteins, such as PRTase, APS-kinase, protein phosphatase, and APRs, involved in sulfur compound biosynthesis and the regulation of flavonoid and brassinosteroid metabolic processes. This suggests the importance of sulfotransferases for proper potato growth and development and stress responses. Notably, homology modeling of StSOT proteins and docking analysis of their ligand-binding sites revealed the presence of proline, glycine, serine, and lysine in their active sites. An expression essay of StSOT genes via potato RNA-Seq data suggested engagement of these gene family members in plants' growth and extension and responses to various hormones and biotic or abiotic stimuli. Our predictions may be informative for the functional characterization of the SOT genes in potato and other nutritional crops.en_US
dc.identifier.doi10.3390/plants10122597
dc.identifier.issn2223-7747
dc.identifier.issue12en_US
dc.identifier.pmid34961068en_US
dc.identifier.scopus2-s2.0-85119904702en_US
dc.identifier.scopusqualityQ1en_US
dc.identifier.urihttps://doi.org/10.3390/plants10122597
dc.identifier.urihttps://hdl.handle.net/20.500.12684/12691
dc.identifier.volume10en_US
dc.identifier.wosWOS:000738038200001en_US
dc.identifier.wosqualityQ1en_US
dc.indekslendigikaynakWeb of Scienceen_US
dc.indekslendigikaynakPubMeden_US
dc.indekslendigikaynakScopusen_US
dc.institutionauthorFiliz, Ertuğrul
dc.language.isoenen_US
dc.publisherMdpien_US
dc.relation.ispartofPlants-Baselen_US
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanıen_US
dc.rightsinfo:eu-repo/semantics/openAccessen_US
dc.snmz$2023V1Guncelleme$en_US
dc.subjectSulfur; Sulfotransferase; Potato; Bioinformatics; Protein Structure; Stimuli Copingen_US
dc.subjectGenome-Wide Identification; Inducible Steroid Sulfotransferase; Desulfoglucosinolate Sulfotransferase; Arabidopsis-Thaliana; Brassica-Napus; Web; Expression; Prediction; Infection; Phosphorylationen_US
dc.titleInvestigation and Computational Analysis of the Sulfotransferase (SOT) Gene Family in Potato (Solanum tuberosum): Insights into Sulfur Adjustment for Proper Development and Stimuli Responsesen_US
dc.typeArticleen_US

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