A key gene bHLH115 in iron homeostasis: comprehensive bioinformatics analyses in Arabidopsis, tomato, rice, and maize

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dc.contributor.authorKurt, Fırat
dc.contributor.authorFiliz, Ertuğrul
dc.contributor.authorKurt, Barış
dc.date.accessioned2020-04-30T22:38:41Z
dc.date.available2020-04-30T22:38:41Z
dc.date.issued2019
dc.departmentDÜ, Çilimli Meslek Yüksekokulu, Bitkisel ve Hayvansal Üretim Bölümüen_US
dc.descriptionKURT, FIRAT/0000-0003-0172-1953; Filiz, Ertugrul/0000-0001-9636-6389en_US
dc.descriptionWOS: 000476715000006en_US
dc.descriptionPubMed: 31062267en_US
dc.description.abstractbHLH115 transcription factor (TF) is a positive regulator of the Fe-deficiency and plays essential roles in the stress-related regulation network. In this study, orthologous bHLH115 genes in Arabidopsis, tomato, rice, and maize were analyzed using in silico methods. All bHLH115 proteins contained PF00010 (HLH: Helix-loop-helix DNA-binding domain) domain structure andtheir sub-cellular localizations were predicted as nucleus. The bHLH115 orthologues in monocots and dicots clearly diverged from each other. The expression analyses revealed that orthologous genes of bHLH115 in queried species were highly expressed in seed parts, leaf, stem, and flower parts. The bHLH115 genes were co-expressed with genes in plant defense system, and withgenes involving inbiotic and abiotic stress responses. In terms of protein structures, OsbHLH115 and ZmbHLH115, and AtbHLH115 and SlbHLH115 had the highest protein structure similarities. In addition, bHLH115 proteins have bZIP, bHLH and MYB transcription factor binding sites strengthens their engagement in various metabolic ways. Molecular docking analyses showed the different binding sites based on plant species, suggesting functional flexibilities of bHLH115 gene.en_US
dc.identifier.doi10.1007/s10534-019-00199-z
dc.identifier.endpage656en_US
dc.identifier.issn0966-0844
dc.identifier.issn1572-8773
dc.identifier.issue4en_US
dc.identifier.scopusqualityQ1en_US
dc.identifier.startpage641en_US
dc.identifier.urihttps://doi.org/10.1007/s10534-019-00199-z
dc.identifier.urihttps://hdl.handle.net/20.500.12684/2367
dc.identifier.volume32en_US
dc.identifier.wosWOS:000476715000006en_US
dc.identifier.wosqualityQ3en_US
dc.indekslendigikaynakWeb of Scienceen_US
dc.indekslendigikaynakPubMeden_US
dc.indekslendigikaynakScopusen_US
dc.language.isoenen_US
dc.publisherSpringeren_US
dc.relation.ispartofBiometalsen_US
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanıen_US
dc.rightsinfo:eu-repo/semantics/closedAccessen_US
dc.subjectIron homeostasisen_US
dc.subjectbHLH115en_US
dc.subjectCo-expression networken_US
dc.subjectMolecular dockingen_US
dc.subjectBioinformaticsen_US
dc.titleA key gene bHLH115 in iron homeostasis: comprehensive bioinformatics analyses in Arabidopsis, tomato, rice, and maizeen_US
dc.typeArticleen_US

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