Ammonium transporter 1 (AMT1) gene family in tomato (Solanum lycopersicum L.): Bioinformatics, physiological and expression analyses under drought and salt stresses

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dc.authoridAkbudak, M. Aydin/0000-0002-1397-4678
dc.contributor.authorFiliz, Ertugrul
dc.contributor.authorAkbudak, M. Aydin
dc.date.accessioned2021-12-01T18:48:28Z
dc.date.available2021-12-01T18:48:28Z
dc.date.issued2020
dc.department[Belirlenecek]en_US
dc.description.abstractNitrogen (N) is an essential macronutrient for plants, and mainly taken from the soil as ammonium (NH+4). It is particularly transported into the plants by AMmonium Transporters (AMTs), which are plasma membrane proteins. In the present study, genome-wide identification, physiological and expression analyses of tomato (Solanum lycopersicum L.) ammonium transporters 1 (SlAMT1) genes under drought and salt stresses were performed. Sequence analyses revealed the presence of variations in SlAMT1s at nucleotide and protein levels. While all the SlAMT1s comprise an ammonium transporter domain (PF00909), the numbers of their transmembrane helices were found to be diverse. Digital expression analyses proved that SlAMT1-3 gene had different expression patterns compared to the others, suggesting its functional diversities. The expression analyses revealed that SlAMT1 genes were 0.16 and 5.94 -fold down-regulated under drought and salt stresses, respectively. The results suggested that expression of SlAMT1 genes were adversely affected by abiotic stress conditions.en_US
dc.description.sponsorshipAkdeniz University Scientific Research Projects Coordination Unit grantAkdeniz University [FBG-2019-4963]en_US
dc.description.sponsorshipThis research was partially supported by Akdeniz University Scientific Research Projects Coordination Unit grant #FBG-2019-4963 to MAA. Authors thank Durmus Cetin and Sukran Yildiz for their technical assistance.en_US
dc.identifier.doi10.1016/j.ygeno.2020.04.009
dc.identifier.endpage3782en_US
dc.identifier.issn0888-7543
dc.identifier.issn1089-8646
dc.identifier.issue5en_US
dc.identifier.pmid32320821en_US
dc.identifier.scopus2-s2.0-85084582218en_US
dc.identifier.scopusqualityQ2en_US
dc.identifier.startpage3773en_US
dc.identifier.urihttps://doi.org/10.1016/j.ygeno.2020.04.009
dc.identifier.urihttps://hdl.handle.net/20.500.12684/10541
dc.identifier.volume112en_US
dc.identifier.wosWOS:000547979000009en_US
dc.identifier.wosqualityQ1en_US
dc.indekslendigikaynakWeb of Scienceen_US
dc.indekslendigikaynakPubMeden_US
dc.indekslendigikaynakScopusen_US
dc.language.isoenen_US
dc.publisherAcademic Press Inc Elsevier Scienceen_US
dc.relation.ispartofGenomicsen_US
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanıen_US
dc.rightsinfo:eu-repo/semantics/closedAccessen_US
dc.subjectNitrogenen_US
dc.subjectAmmoniumen_US
dc.subjectTomatoen_US
dc.subjectGene expressionen_US
dc.subjectBioinformaticsen_US
dc.subjectRoot Hairsen_US
dc.subjectProteinen_US
dc.subjectSequenceen_US
dc.subjectPredictionen_US
dc.subjectDatabaseen_US
dc.subjectMechanismen_US
dc.subjectNetworksen_US
dc.subjectTopologyen_US
dc.subjectNitrogenen_US
dc.subjectGrowthen_US
dc.titleAmmonium transporter 1 (AMT1) gene family in tomato (Solanum lycopersicum L.): Bioinformatics, physiological and expression analyses under drought and salt stressesen_US
dc.typeArticleen_US

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