Genome-wide identification and expression analysis of sulphate transporter (SULTR) genes under sulfur deficiency in Brachypodium distachyon

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dc.contributor.authorTombuloğlu, Hüseyin
dc.contributor.authorFiliz, Ertuğrul
dc.contributor.authorAydın, Mehtap
dc.contributor.authorKoç, İbrahim
dc.date.accessioned2020-05-01T12:10:13Z
dc.date.available2020-05-01T12:10:13Z
dc.date.issued2017
dc.departmentDÜ, Çilimli Meslek Yüksekokulu, Bitkisel ve Hayvansal Üretim Bölümüen_US
dc.descriptionTombuloglu, Huseyin/0000-0001-8546-2658en_US
dc.descriptionWOS: 000404618300002en_US
dc.description.abstractSulphur is an important mineral element for plant growth and development. It involves in a number of metabolic processes with crucial functions. This study has performed a genome-wide analysis of sulfate transporter (SULTR) genes in Brachypodium distachyon. Ten putative SULTR genes were identified in Brachypodium genome. BdSULTR genes included 6-17 exons encoding a protein of 647-693 residues with basic nature. BdSULTR proteins included both sulfate_transp (PF00916) and STAS (PF01740) domains. BdSULTRs were classified into 4 groups based on the phylogenetic distribution. Promoter regions of all BdSULTR genes, except for BdSULTR3;3 and 3;5 included the SURECOREATSULTR11 elements. A considerable structural overlap was identified between superimposed SULTR1;3 and 3;1 proteins, indicating that SULTR1 members may also involve in plant stress response/tolerance like SULTR3 members. Microarray and RNA-Seq analyses also revealed the differential expression of SULTR 1 and 3 genes under different biotic/abiotic stresses. Protein-protein interaction partners of BdSULTRs were mainly related with adenylyl-sulfate kinases, 5'-adenylylsulfate reductases, ATP sulfurylases, and acyl carrier proteins. Moreover, expression profiles of identified BdSULTR genes under S-deficiency were analyzed using RT-qPCR. It was revealed that BdSULTR1;1 and 3;1 are highly expressed in plant roots as similar to tenfold and similar to fivefold, respectively, while BdSULTR2 (similar to 15-fold) and 3;1 (similar to twofold) are abundantly expressed in leaf tissues.en_US
dc.identifier.doi10.1007/s13562-016-0388-0en_US
dc.identifier.endpage273en_US
dc.identifier.issn0971-7811
dc.identifier.issn0974-1275
dc.identifier.issue3en_US
dc.identifier.scopusqualityQ2en_US
dc.identifier.startpage263en_US
dc.identifier.urihttps://doi.org/10.1007/s13562-016-0388-0
dc.identifier.urihttps://hdl.handle.net/20.500.12684/6089
dc.identifier.volume26en_US
dc.identifier.wosWOS:000404618300002en_US
dc.identifier.wosqualityQ4en_US
dc.indekslendigikaynakWeb of Scienceen_US
dc.indekslendigikaynakScopusen_US
dc.language.isoenen_US
dc.publisherSpringer Indiaen_US
dc.relation.ispartofJournal Of Plant Biochemistry And Biotechnologyen_US
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanıen_US
dc.rightsinfo:eu-repo/semantics/closedAccessen_US
dc.subjectAbiotic stressen_US
dc.subjectMicroarrayen_US
dc.subjectProtein interactionsen_US
dc.subjectSULTRen_US
dc.subjectSulphur deficiencyen_US
dc.subjectSURE boxen_US
dc.titleGenome-wide identification and expression analysis of sulphate transporter (SULTR) genes under sulfur deficiency in Brachypodium distachyonen_US
dc.typeArticleen_US

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