Pathogenesis related protein-1 (PR-1) genes in tomato (Solanum lycopersicum L.): Bioinformatics analyses and expression profiles in response to drought stress

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dc.authoridAkbudak, M. Aydin/0000-0002-1397-4678
dc.contributor.authorAkbudak, M. Aydin
dc.contributor.authorYildiz, Sukran
dc.contributor.authorFiliz, Ertugrul
dc.date.accessioned2021-12-01T18:48:53Z
dc.date.available2021-12-01T18:48:53Z
dc.date.issued2020
dc.department[Belirlenecek]en_US
dc.description.abstractThe pathogenesis-related protein 1 (PR-1) gene family play important roles in the plant metabolism in response to biotic and abiotic stresses. The present study aimed genome-wide identification and bioinformatics analyses of PR-1 genes in tomato (Solanum lycopersicum L.). The analyses resulted in the identification of 13 novel SlPR-1 genes, each of which produce a protein belonging to the CAP superfamily (PF00188). The KEGG annotation analyses revealed that the SlPR-1 proteins functioned in the environmental information processing (09130). The expression patterns of the PR-1 genes and some stress-related physiological parameters were investigated in Fusarium oxysporum sensitive and tolerant tomato varieties under drought stress. The drought stress leaded upregulation of all SlPR-1 genes, reaching up to 50 folds. The results indicate that the SlPR-1 genes play active roles in response to drought. This is the first study exhibiting the expression profiles of SlPR-1 genes under an abiotic stress, drought, in tomato.en_US
dc.identifier.doi10.1016/j.ygeno.2020.07.004
dc.identifier.endpage4099en_US
dc.identifier.issn0888-7543
dc.identifier.issn1089-8646
dc.identifier.issue6en_US
dc.identifier.pmid32650094en_US
dc.identifier.scopus2-s2.0-85087911940en_US
dc.identifier.scopusqualityQ2en_US
dc.identifier.startpage4089en_US
dc.identifier.urihttps://doi.org/10.1016/j.ygeno.2020.07.004
dc.identifier.urihttps://hdl.handle.net/20.500.12684/10626
dc.identifier.volume112en_US
dc.identifier.wosWOS:000600744300010en_US
dc.identifier.wosqualityQ1en_US
dc.indekslendigikaynakWeb of Scienceen_US
dc.indekslendigikaynakPubMeden_US
dc.indekslendigikaynakScopusen_US
dc.language.isoenen_US
dc.publisherAcademic Press Inc Elsevier Scienceen_US
dc.relation.ispartofGenomicsen_US
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanıen_US
dc.rightsinfo:eu-repo/semantics/closedAccessen_US
dc.subjectGene expressionen_US
dc.subjectAbiotic stressen_US
dc.subjectRT-qPCRen_US
dc.subjectMDAen_US
dc.subjectH2O2en_US
dc.subjectTranscription Factoren_US
dc.subjectTobaccoen_US
dc.subjectPredictionen_US
dc.subjectAciden_US
dc.subjectIdentificationen_US
dc.subjectSuperfamilyen_US
dc.subjectResistanceen_US
dc.subjectFamiliesen_US
dc.subjectBindingen_US
dc.subjectRolesen_US
dc.titlePathogenesis related protein-1 (PR-1) genes in tomato (Solanum lycopersicum L.): Bioinformatics analyses and expression profiles in response to drought stressen_US
dc.typeArticleen_US

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