Characterization of wound-induced serine protease inhibitor (wip1) genes and proteins in Turkish maize varieties

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dc.contributor.authorFiliz, Ertuğrul
dc.contributor.authorTombuloğlu, Hüseyin
dc.contributor.authorKoç, İbrahim
dc.contributor.authorOsma, Etem
dc.date.accessioned2020-04-30T22:40:44Z
dc.date.available2020-04-30T22:40:44Z
dc.date.issued2014
dc.departmentDÜ, Çilimli Meslek Yüksekokulu, Bitkisel ve Hayvansal Üretim Bölümüen_US
dc.descriptionFiliz, Ertugrul/0000-0001-9636-6389; Tombuloglu, Huseyin/0000-0001-8546-2658en_US
dc.descriptionWOS: 000340553500012en_US
dc.descriptionPubMed: 25365494en_US
dc.description.abstractProtease inhibitors (PIs) are generally small proteins that have been identified in plants. The wip1 gene codes for wound-induced protein, which is similar to serine PIs of the Bowman-Birk family (BBIs). In this study, we analyzed 10 wip1 genes of Turkish maize varieties to understand the structure and characteristics of the wip1 genes and proteins in maize. We found that genetic variability of wip1 genes was higher (pi: 0.0173) than reported in previous studies. Tajima's D value was found to be positive (1.73), suggesting over-dominant selection in these loci. According to phylogenetic analysis of wip1 proteins, monocot and dicot BBIs were separated independently, and Turkish varieties were clustered with each other generally. The 3D structures of wip1 proteins indicated that several wip1 proteins had structural divergence in active loops, containing various numbers of cysteine residues ranging between 7 and 9. Particularly, Cys74 was identified in Kocbey and Gozdem varieties, whereas Cys98 was only in the Gozdem variety. Also, a critical serine residue (Ser98) was observed in two varieties - Antbey and Batem Efe. These results can contribute to understanding the role of wip1 genes and corresponding proteins in maize.en_US
dc.identifier.doi10.1134/S0006297914080124en_US
dc.identifier.endpage844en_US
dc.identifier.issn0006-2979
dc.identifier.issn1608-3040
dc.identifier.issue8en_US
dc.identifier.scopusqualityQ2en_US
dc.identifier.startpage836en_US
dc.identifier.urihttps://doi.org/10.1134/S0006297914080124
dc.identifier.urihttps://hdl.handle.net/20.500.12684/3046
dc.identifier.volume79en_US
dc.identifier.wosWOS:000340553500012en_US
dc.identifier.wosqualityQ4en_US
dc.indekslendigikaynakWeb of Scienceen_US
dc.indekslendigikaynakPubMeden_US
dc.indekslendigikaynakScopusen_US
dc.language.isoenen_US
dc.publisherMaik Nauka/Interperiodica/Springeren_US
dc.relation.ispartofBiochemistry-Moscowen_US
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanıen_US
dc.rightsinfo:eu-repo/semantics/closedAccessen_US
dc.subjectprotease inhibitorsen_US
dc.subjectwound-induced proteinen_US
dc.subjectBowman-Birk familyen_US
dc.subjectTurkish maizeen_US
dc.titleCharacterization of wound-induced serine protease inhibitor (wip1) genes and proteins in Turkish maize varietiesen_US
dc.typeArticleen_US

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