Genome-wide identification and analysis of growth regulating factor genes in Brachypodium distachyon: in silico approaches

Basit Öğe Kaydı
dc.contributor.authorFiliz, Ertuğrul
dc.contributor.authorKoç, İbrahim
dc.contributor.authorTombuloğlu, Hüseyin
dc.date.accessioned2020-05-01T12:10:13Z
dc.date.available2020-05-01T12:10:13Z
dc.date.issued2014
dc.departmentDÜ, Çilimli Meslek Yüksekokulu, Bitkisel ve Hayvansal Üretim Bölümüen_US
dc.descriptionFiliz, Ertugrul/0000-0001-9636-6389; Tombuloglu, Huseyin/0000-0001-8546-2658en_US
dc.descriptionWOS: 000332944300016en_US
dc.description.abstractGrowth-regulating factor (GRF) genes may play important roles for regulating growth and development in different plant tissues and organs. Here we report the first genome-wide analysis of the GRF gene family in Brachypodium. We performed in silico comparative analysis of GRF genes, including their structure, duplication in the genome, conserved motifs, and phylogenetic relationship. At the end of the study, 10 BdGRF genes were identified. The highest number of GRF genes was identified on chromosome 1 with 5 members, whereas the least number of genes (only 1 member) was found on chromosomes 2, 4, and 5. Of those, a single segmental duplication was observed in the Brachypodium genome. Average exon and intron numbers were determined as 3 and 4, respectively. Motif analysis showed that WRC and QLQ residues were consistent in all GRF protein sequences. Gene Ontology terms showed that 10 BdGRF proteins grouped in the same biological function, biological process, and cellular component groups. In addition, we compared the new BdGRF proteins with the other monocot and dicot GRF proteins sequences. Phylogenetic analysis revealed that GRF proteins of monocot and dicot species were clustered together in a joined tree; in particular, the monocot species (Brachypodium, maize, and rice) were grouped into the same cluster with high bootstrap values. We assume that the results of this study will provide molecular insights about GRF proteins in grass species.en_US
dc.identifier.doi10.3906/biy-1308-57en_US
dc.identifier.endpage306en_US
dc.identifier.issn1300-0152
dc.identifier.issn1303-6092
dc.identifier.issue2en_US
dc.identifier.scopusqualityQ2en_US
dc.identifier.startpage296en_US
dc.identifier.urihttps://doi.org/10.3906/biy-1308-57
dc.identifier.urihttps://hdl.handle.net/20.500.12684/6084
dc.identifier.volume38en_US
dc.identifier.wosWOS:000332944300016en_US
dc.identifier.wosqualityQ3en_US
dc.indekslendigikaynakWeb of Scienceen_US
dc.indekslendigikaynakScopusen_US
dc.indekslendigikaynakTR-Dizinen_US
dc.language.isoenen_US
dc.publisherTubitak Scientific & Technical Research Council Turkeyen_US
dc.relation.ispartofTurkish Journal Of Biologyen_US
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanıen_US
dc.rightsinfo:eu-repo/semantics/openAccessen_US
dc.subjectBrachypodium distachyonen_US
dc.subjectgrowth regulating factoren_US
dc.subjectGRFen_US
dc.subjectgenome-wide analysisen_US
dc.titleGenome-wide identification and analysis of growth regulating factor genes in Brachypodium distachyon: in silico approachesen_US
dc.typeArticleen_US

Dosyalar

Orijinal paket
Listeleniyor 1 - 1 / 1
Küçük Resim
İsim:
6084.pdf
Boyut:
1.62 MB
Biçim:
Adobe Portable Document Format
Açıklama:
Tam Metin / Full Text
İndir

Koleksiyon

WoS İndeksli Yayınlar Koleksiyonu
Makale Koleksiyonu
Scopus İndeksli Yayınlar Koleksiyonu
TR-Dizin İndeksli Yayınlar Koleksiyonu