Comparative and phylogenetic analysis of zinc transporter genes/proteins in plants

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dc.contributor.authorVatansever, Recep
dc.contributor.authorÖzyiğit, İbrahim İlker
dc.contributor.authorFiliz, Ertuğrul
dc.date.accessioned2020-04-30T22:41:06Z
dc.date.available2020-04-30T22:41:06Z
dc.date.issued2016
dc.departmentDÜ, Çilimli Meslek Yüksekokulu, Bitkisel ve Hayvansal Üretim Bölümüen_US
dc.descriptionFiliz, Ertugrul/0000-0001-9636-6389; Ozyigit, Ibrahim Ilker/0000-0002-0825-5951en_US
dc.descriptionWOS: 000378689400009en_US
dc.description.abstractZinc is an important catalytic element for more than 300 enzymes and plays a structural role in the stabilization of many proteins. Protein domain analysis showed that identified Zn transporter proteins belong to the ZIP protein family (PF02535). Zn transporter sequences were found to have similar molecular weights (33.1-51.4 kDa) and amino acid lengths (306-478 amino acids) with 5.31-8.92 pI values. Subcellular localization of Zn transporters was predicted as the plasma membrane. They had 6-9 putative transmembrane domains with a variable region between TM-3 and TM-4, which could contain a potential histidine-rich metal-binding domain. Moreover, alignment analysis showed that the TM-2, -4, and -5 domains could be potential metal-binding sites because they contain highly conserved His residues. Based on a homology search, the retrieved sequences were identified as corresponding homologs of either Arabidopsis thaliana or Oryza sativa. Phylogenetic analysis also supported that A. thaliana and O. sativa sequences could be used as a reference/benchmark to identify Zn transporter homologs in various plant species. The findings of this study will be valuable theoretical knowledge for feature studies in terms of understanding the gene and protein features of Zn transporters in various plants.en_US
dc.identifier.doi10.3906/biy-1501-91en_US
dc.identifier.endpage611en_US
dc.identifier.issn1300-0152
dc.identifier.issn1303-6092
dc.identifier.issue3en_US
dc.identifier.scopusqualityQ2en_US
dc.identifier.startpage600en_US
dc.identifier.urihttps://doi.org/10.3906/biy-1501-91
dc.identifier.urihttps://hdl.handle.net/20.500.12684/3122
dc.identifier.volume40en_US
dc.identifier.wosWOS:000378689400009en_US
dc.identifier.wosqualityQ3en_US
dc.indekslendigikaynakWeb of Scienceen_US
dc.indekslendigikaynakScopusen_US
dc.indekslendigikaynakTR-Dizinen_US
dc.language.isoenen_US
dc.publisherTubitak Scientific & Technical Research Council Turkeyen_US
dc.relation.ispartofTurkish Journal Of Biologyen_US
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanıen_US
dc.rightsinfo:eu-repo/semantics/openAccessen_US
dc.subjectZIPen_US
dc.subjecttransmembrane domainen_US
dc.subjecthistidine residueen_US
dc.subjectmetal-binding siteen_US
dc.subjectconserved motifsen_US
dc.titleComparative and phylogenetic analysis of zinc transporter genes/proteins in plantsen_US
dc.typeArticleen_US

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