Antimicrobial peptides Snakin/GASA gene family in sorghum (Sorghum bicolor): Genome-wide identification and bioinformatics analyses

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dc.authoridKURT, FIRAT/0000-0003-0172-1953
dc.contributor.authorFiliz, Ertugrul
dc.contributor.authorKurt, Firat
dc.date.accessioned2021-12-01T18:48:49Z
dc.date.available2021-12-01T18:48:49Z
dc.date.issued2020
dc.department[Belirlenecek]en_US
dc.description.abstractAntimicrobial peptides (AMPs) are important biomolecules in plant innate immunity and snakins (SNs) are one of them. In this study, SN genes were first identified in sorghum (Sorghum bicolor, Sb) genome and analyzed using bioinformatical approaches. A total of 12 SbSN genes were found and peptide chain lengths were between 93 and 137 amino acids. In addition, it was found that all SN proteins contained the GASA (PF02704) domain structure, conserved cysteine residues and were basic character. According to GO annotation data, SbSN proteins were found to be commonly associated with hormone response in biological processes. When the promoter regions were examined, it was found that there were 16 types of transcription factor binding sites, proving dynamic gene regulation. According to digital expression data, SbSN genes were found to exhibit various expression profiles depending on the six tissue types. According to co-expression data consisting of 573 genes, SbSN genes were found to be positively associated with protein kinase genes and showed direct connection with them. In terms of the predicted 3D structures and surface pockets, SbSN proteins were found to exhibit structural diversity. As a result, the findings will contribute to the understanding of SN proteins in plants, particularly in sorghum plant.en_US
dc.identifier.doi10.1016/j.genrep.2020.100766
dc.identifier.issn2452-0144
dc.identifier.scopus2-s2.0-85087381756en_US
dc.identifier.scopusqualityQ4en_US
dc.identifier.urihttps://doi.org/10.1016/j.genrep.2020.100766
dc.identifier.urihttps://hdl.handle.net/20.500.12684/10610
dc.identifier.volume20en_US
dc.identifier.wosWOS:000560607800006en_US
dc.identifier.wosqualityN/Aen_US
dc.indekslendigikaynakWeb of Scienceen_US
dc.indekslendigikaynakScopusen_US
dc.language.isoenen_US
dc.publisherElsevieren_US
dc.relation.ispartofGene Reportsen_US
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanıen_US
dc.rightsinfo:eu-repo/semantics/closedAccessen_US
dc.subjectPlant defenseen_US
dc.subjectPathogenen_US
dc.subjectInnate immunityen_US
dc.subjectGASAen_US
dc.subjectBioinformaticsen_US
dc.subjectRhizoctonia-Solanien_US
dc.subjectPotatoen_US
dc.subjectSnakin-1en_US
dc.subjectSequenceen_US
dc.subjectPredictionen_US
dc.titleAntimicrobial peptides Snakin/GASA gene family in sorghum (Sorghum bicolor): Genome-wide identification and bioinformatics analysesen_US
dc.typeArticleen_US

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