Assessment of genetic variations of silver lime (Tilia tomentosa Moench.) by RAPD markers in urban and forest ecosystems

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dc.contributor.authorFiliz, Ertuğrul
dc.contributor.authorBirbilener, Seda
dc.contributor.authorÖzyiğit, İbrahim İlker
dc.contributor.authorKulaç, Şemsettin
dc.contributor.authorOruç, Fatma Çiğdem Sakinoğlu
dc.date.accessioned2020-04-30T22:39:45Z
dc.date.available2020-04-30T22:39:45Z
dc.date.issued2015
dc.departmentDÜ, Çilimli Meslek Yüksekokulu, Bitkisel ve Hayvansal Üretim Bölümüen_US
dc.descriptionFiliz, Ertugrul/0000-0001-9636-6389; Ozyigit, Ibrahim Ilker/0000-0002-0825-5951en_US
dc.descriptionWOS: 000356960300004en_US
dc.description.abstractIn the present study, the genetic diversity analysis of Tilia tomentosa plants was performed by using random amplified polymorphic DNA (RAPD) primers. Twenty eight plant samples, collected from urban (25 members) and forest (3 members) ecosystems, were used in this study. A total of 53 bands were obtained from eight RAPD primers, of which 48 (90.6%) were polymorphic. The percentage of polymorphic loci (P) was found to be 94.29%, the observed number of alleles (Na) was 1.94, the effective number of alleles (Ne) was 1.60, Nei's gene diversity (h) was 0.34 and Shannon's information index (I) was 0.50. Unweighted pair group method with arithmetic mean (UPGMA) cluster analysis revealed two major groups. Members of the urban and forest ecosystems showed high genetic similarity (28%-92%) and they did not separate from each other in UPGMA tree. Furthermore, urban and forest genotypes clustered together in principal component analysis.en_US
dc.description.sponsorshipScientific Research Projects of Duzce UniversityDuzce University [2012.23.01.116]; Marmara UniversityMarmara University [FEN-D-140115-0014]en_US
dc.description.sponsorshipScientific Research Projects of Duzce University [grant number 2012.23.01.116]; Marmara University [grant number FEN-D-140115-0014].en_US
dc.identifier.doi10.1080/13102818.2015.1042049en_US
dc.identifier.endpage636en_US
dc.identifier.issn1310-2818
dc.identifier.issn1314-3530
dc.identifier.issue4en_US
dc.identifier.scopusqualityQ3en_US
dc.identifier.startpage631en_US
dc.identifier.urihttps://doi.org/10.1080/13102818.2015.1042049
dc.identifier.urihttps://hdl.handle.net/20.500.12684/2816
dc.identifier.volume29en_US
dc.identifier.wosWOS:000356960300004en_US
dc.identifier.wosqualityQ4en_US
dc.indekslendigikaynakWeb of Scienceen_US
dc.indekslendigikaynakScopusen_US
dc.language.isoenen_US
dc.publisherTaylor & Francis Ltden_US
dc.relation.ispartofBiotechnology & Biotechnological Equipmenten_US
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanıen_US
dc.rightsinfo:eu-repo/semantics/openAccessen_US
dc.subjectgenetic diversityen_US
dc.subjectprincipal component analysis (PCA)en_US
dc.subjectUPGMAen_US
dc.subjecturban ecosystemen_US
dc.titleAssessment of genetic variations of silver lime (Tilia tomentosa Moench.) by RAPD markers in urban and forest ecosystemsen_US
dc.typeArticleen_US

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