Wall associated kinases (WAKs) gene family in tomato (Solanum lycopersicum): Insights into plant immunity

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dc.authoridKURT, BARIS/0000-0002-1406-0915
dc.authoridKURT, FIRAT/0000-0003-0172-1953
dc.authoridFiliz, Ertugrul/0000-0001-9636-6389
dc.authorwosidFiliz, Ertugrul/I-9440-2016
dc.contributor.authorKurt, Firat
dc.contributor.authorKurt, Baris
dc.contributor.authorFiliz, Ertugrul
dc.date.accessioned2021-12-01T18:47:51Z
dc.date.available2021-12-01T18:47:51Z
dc.date.issued2020
dc.department[Belirlenecek]en_US
dc.description.abstractWall-associated kinases (WAKs), a subgroup of receptor-like kinases (RLKs), are localized on the cell wall and have roles in pathogen recognition and signal transduction in plants due to their interactions with pectin molecules. In this study, it was aimed at characterizing WAK genes in tomato (Solanum lycopersicum) using bioinformatics approaches. In this respect, all SlWAKs were identified as RD-kinases and all motifs in eukaryotic protein kinase (ePK) subdomains in SlWAKs were determined. Motif, sequence, and protein structure analyses showed that Solyc07g007020.2 and Solyc09g014740.2 are more distinctive proteins among SlWAKs suggesting that they may be involved in very specific pathways in plant defense system and may have different ligand selectivity. Other than that, we found that miRNAs silencing SlWAK genes are involved in various pathways and controlled with complex biological processes. Docking analyses showed that oligomeric pectin has higher binding affinity to SlWAK1. The findings are important for plant protection studies aiming at identifying roles of different WAKs in plant immune system, particularly in tomato.en_US
dc.identifier.doi10.1016/j.genrep.2020.100828
dc.identifier.issn2452-0144
dc.identifier.scopus2-s2.0-85089655668en_US
dc.identifier.scopusqualityQ4en_US
dc.identifier.urihttps://doi.org/10.1016/j.genrep.2020.100828
dc.identifier.urihttps://hdl.handle.net/20.500.12684/10392
dc.identifier.volume21en_US
dc.identifier.wosWOS:000597341200005en_US
dc.identifier.wosqualityN/Aen_US
dc.indekslendigikaynakWeb of Scienceen_US
dc.indekslendigikaynakScopusen_US
dc.language.isoenen_US
dc.publisherElsevieren_US
dc.relation.ispartofGene Reportsen_US
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanıen_US
dc.rightsinfo:eu-repo/semantics/closedAccessen_US
dc.subjectWall-associated kinases (WAKs)en_US
dc.subjectPathogenen_US
dc.subjectImmunityen_US
dc.subjectBioinformaticsen_US
dc.subjectOligomer pectinen_US
dc.subjectDockingen_US
dc.subjectProteinen_US
dc.subjectIdentificationen_US
dc.subjectMicrornasen_US
dc.subjectExpressionen_US
dc.subjectPredictionen_US
dc.subjectNetworksen_US
dc.titleWall associated kinases (WAKs) gene family in tomato (Solanum lycopersicum): Insights into plant immunityen_US
dc.typeArticleen_US

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