Exploration of two major boron transport genes BOR1 and NIP5;1 in the genomes of different plants

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dc.authoridOZYIGIT, IBRAHIM ILKER/0000-0002-0825-5951
dc.authorwosidOZYIGIT, IBRAHIM ILKER/ABH-8352-2020
dc.contributor.authorOzyigit, Ibrahim Ilker
dc.contributor.authorFiliz, Ertugrul
dc.contributor.authorSaracoglu, Ibrahim Adnan
dc.contributor.authorKaradeniz, Sedat
dc.date.accessioned2021-12-01T18:50:03Z
dc.date.available2021-12-01T18:50:03Z
dc.date.issued2020
dc.department[Belirlenecek]en_US
dc.description.abstractBoron (B) is an essential plant micronutrient but studies regarding its transport are still limited to a few plants. This work identified two major B transport sequences in plants, NIP5;1 boric acid channel protein and BOR1 transporter. 80 BOR1 and 34 NIP5;1 homologs were identified in 18 different plant genomes. BOR1 homologs had a HCO3-transporter domain, 649-737 amino-acid residues with mainly basic nature, putative 8-11 transmembrane domains (TMDs) and 11-13 exons. NIP5;1 homologs had a MIP family domain, 294-311 amino-acid residues with basic nature, 5-6 putative TMDs and 3-5 exons. Tyrosine-based motif, acidic di-leucine motif and lysine residue, reported for polarity, vacuolar sorting and B-dependent degradation, were identified in BOR1 homologs. Two NPA motifs and an ar/R selectivity filter with AIGR residues, reportedly essential in B transport, were also found in NIP5;1 homologs. Two NPA motifs in AtNIP5;1 and OsNIP3;1 homologs were NPS and NPV, whereas in sequences homologous to AtNIP6;1 were NPA/V. Besides, ar/R selectivity filters were identified with A(N/S/T)IGR residues in NIP5;1 and NIP3;1 homologs. The BOR1 and NIP5;1 model structures were mainly conserved. Under different perturbations, Arabidopsis thaliana NIP5;1 and NIP6;1 genes demonstrated similar expression patterns although they act in different tissues, suggesting a common regulatory mechanism, whereas BOR1 showed a different expression pattern. BOR1 was substantially expressed in primary root, radicle and flower; NIP5;1 in primary root and roots, and NIP6;1 in petiole. NIP5;1, 6;1 and BOR1 expression in other plant organs implied their involvement in different pathways in addition to B uptake and its mobilization.en_US
dc.identifier.doi10.1080/13102818.2020.1773311
dc.identifier.endpage468en_US
dc.identifier.issn1310-2818
dc.identifier.issn1314-3530
dc.identifier.issue1en_US
dc.identifier.scopus2-s2.0-85087093473en_US
dc.identifier.scopusqualityQ3en_US
dc.identifier.startpage455en_US
dc.identifier.urihttps://doi.org/10.1080/13102818.2020.1773311
dc.identifier.urihttps://hdl.handle.net/20.500.12684/10818
dc.identifier.volume34en_US
dc.identifier.wosWOS:000538924900001en_US
dc.identifier.wosqualityQ4en_US
dc.indekslendigikaynakWeb of Scienceen_US
dc.indekslendigikaynakScopusen_US
dc.language.isoenen_US
dc.publisherTaylor & Francis Ltden_US
dc.relation.ispartofBiotechnology & Biotechnological Equipmenten_US
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanıen_US
dc.rightsinfo:eu-repo/semantics/openAccessen_US
dc.subjectBoric aciden_US
dc.subjectorthologueen_US
dc.subjectparalogen_US
dc.subjecthomologen_US
dc.subjectmotifen_US
dc.subjectselectivity filteren_US
dc.subjectEfflux Transporteren_US
dc.subjectInflorescence Developmenten_US
dc.subjectReproductive Developmenten_US
dc.subjectRhamnogalacturonan Iien_US
dc.subjectWide Identificationen_US
dc.subjectCross-Linkingen_US
dc.subjectCell-Wallsen_US
dc.subjectRolesen_US
dc.subjectExpressionen_US
dc.subjectDeficiencyen_US
dc.titleExploration of two major boron transport genes BOR1 and NIP5;1 in the genomes of different plantsen_US
dc.typeArticleen_US

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