Characterization of ZmSnRK1 genes and their response to aphid feeding, drought and cold stress

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dc.authorscopusid8856341800en_US
dc.authorscopusid57768580100en_US
dc.authorscopusid57206274614en_US
dc.authorscopusid23984566200en_US
dc.authorscopusid54381093700en_US
dc.authorscopusid55425990300en_US
dc.contributor.authorAkbudak, M. Aydin
dc.contributor.authorYildiz, Kubra
dc.contributor.authorCetin, Durmus
dc.contributor.authorFiliz, Ertugrul
dc.contributor.authorYukselbaba, Utku
dc.contributor.authorSrivastava, Vibha
dc.date.accessioned2024-08-23T16:07:08Z
dc.date.available2024-08-23T16:07:08Z
dc.date.issued2024en_US
dc.departmentDüzce Üniversitesien_US
dc.description.abstractThe SnRK1 complex in plants regulates metabolism in response to environmental stresses and glucose depletion, for stress adaptation and energy homeostasis. Through phosphorylation of various targets, SnRK1 orchestrates intricate regulatory mechanisms involved in autophagy, nutrient remobilization, and TOR activity inhibition, showcasing its pivotal role in coordinating plant metabolism and stress responses. The present study aimed to identify members of the SnRK1 gene family in the maize genome and characterize them using bioinformatics and expression analyses under aphid feeding, drought, and cold stress. The focus of the study was to conduct a comprehensive analysis towards determining gene diversity of ZmSnRK1 genes, constructing intricate 3D structures, and identifying stress-related cis-elements. Four SnRK1 genes were identified, which were named ZmSnRK1.1, ZmSnRK1.2, ZmSnRK1.3, and ZmSnRK1.4. The SnRK1 proteins were found to have a distribution of conserved motifs; however, the distinction between monocots and dicots in the phylogenetic tree was clearly demonstrated. Analysis of the promoter region revealed that the ZmSnRK1 genes contain stress-related cis-elements. Compared to the control, ZmSnRK1.3 significantly upregulated in response to aphid feeding and cold stress, while ZmSnRK1.2 showed elevated expression under drought conditions. The expression of the other two genes under these treatments was generally unperturbed. The findings of this study are poised to establish a valuable scientific foundation for future research on the roles of the SnRK1 gene family in plants, providing valuable insights for enhancing genetic resilience to stress and optimizing yield traits.en_US
dc.description.sponsorshipAkdeniz niversitesi [FBA-2023-6290]; Akdeniz University Scientific Research Projects Coordination Unit competitive grant; Fulbright Visiting Scholar grant from the Turkish Fulbright Commissionen_US
dc.description.sponsorshipThis study was supported by Akdeniz University Scientific Research Projects Coordination Unit competitive grant # FBA-2023-6290 to MAA. MAA is thankful for the financial support provided by the Fulbright Visiting Scholar grant from the Turkish Fulbright Commission.en_US
dc.identifier.doi10.1007/s10722-024-02006-2
dc.identifier.issn0925-9864
dc.identifier.issn1573-5109
dc.identifier.scopus2-s2.0-85192692050en_US
dc.identifier.scopusqualityQ2en_US
dc.identifier.urihttps://doi.org/10.1007/s10722-024-02006-2
dc.identifier.urihttps://hdl.handle.net/20.500.12684/14515
dc.identifier.wosWOS:001221286900002en_US
dc.identifier.wosqualityN/Aen_US
dc.indekslendigikaynakWeb of Scienceen_US
dc.indekslendigikaynakScopusen_US
dc.language.isoenen_US
dc.publisherSpringeren_US
dc.relation.ispartofGenetic Resources and Crop Evolutionen_US
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanıen_US
dc.rightsinfo:eu-repo/semantics/openAccessen_US
dc.subjectProtein kinaseen_US
dc.subjectSNF1en_US
dc.subjectSnRK1en_US
dc.subjectStress responseen_US
dc.subjectMaizeen_US
dc.subjectSnf1-Related Protein-Kinasesen_US
dc.subjectEnergy Sensoren_US
dc.subjectGlobal Regulatorsen_US
dc.subjectCarbon Metabolismen_US
dc.subjectSugar Signalsen_US
dc.subjectPlant Defenseen_US
dc.subjectSnrk1 Kinaseen_US
dc.subjectYeasten_US
dc.subjectPhosphorylationen_US
dc.subjectLocalizationen_US
dc.titleCharacterization of ZmSnRK1 genes and their response to aphid feeding, drought and cold stressen_US
dc.typeArticleen_US

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