Genome-wide identification of the VOZ transcription factors in tomato (Solanum lycopersicum): their functions during fruit ripening and their responses to salinity stress

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dc.authoridKURT, FIRAT/0000-0003-0172-1953
dc.authorwosidKURT, FIRAT/ABE-7878-2021
dc.contributor.authorUluışık, Selman
dc.contributor.authorKıyak, Ali
dc.contributor.authorKurt, Fırat
dc.contributor.authorFiliz, Ertuğrul
dc.date.accessioned2023-07-26T11:54:20Z
dc.date.available2023-07-26T11:54:20Z
dc.date.issued2022
dc.departmentDÜ, Meslek Yüksekokulu, Bitkisel ve Hayvansal Üretim Bölümüen_US
dc.description.abstractAs a plant-specific transcription factor, vascular plant One-Zinc-finger (VOZ) is involved in the regulation of many biological processes. VOZ genes in tomato have not been analysed comprehensively so far. In this study, two SIVOZs were identified on a genome-wide scale in tomato and analysed using various bioinformatics methods. According to Ka/Ks ratio, SlVOZ proteins are being changed by evolutionary processes to adapt to changing growth and stress conditions. Protein structure and phylogenetic analyses also indicated that transcriptional regulations of SlVOZs were controlled in a specific manner related to developmental stages and abiotic stress conditions. Digital expression results, in particular, showed that SlVOZs are not only active during different growth status of tomato but are also involved in abiotic stress response mechanism. Nonetheless, SlVOZ1 is expressed higher in both developmental stages and under salt stress conditions, confirmed by RT-qPCR. The co-expression maps constructed using RNA-seq data showed that SlVOZ2 was associated with the genes involved in hormonal regulation, formation of fruit shape, secondary wall biosynthesis and in plant development. Overall, it can be concluded that SlVOZs are not only important for plant growth and development but may also be part of the salt stress response mechanism.en_US
dc.identifier.doi10.1080/14620316.2022.2153088
dc.identifier.issn1462-0316
dc.identifier.issn2380-4084
dc.identifier.scopus2-s2.0-85143537210en_US
dc.identifier.scopusqualityQ2en_US
dc.identifier.urihttps://doi.org/10.1080/14620316.2022.2153088
dc.identifier.urihttps://hdl.handle.net/20.500.12684/12804
dc.identifier.wosWOS:000910790200001en_US
dc.identifier.wosqualityQ2en_US
dc.indekslendigikaynakWeb of Scienceen_US
dc.indekslendigikaynakScopusen_US
dc.institutionauthorFiliz, Ertuğrul
dc.language.isoenen_US
dc.publisherTaylor & Francis Ltden_US
dc.relation.ispartofJournal of Horticultural Science & Biotechnologyen_US
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanıen_US
dc.rightsinfo:eu-repo/semantics/closedAccessen_US
dc.snmz$2023V1Guncelleme$en_US
dc.subjectBioinformatics; Co-Expression; Fruit Ripening; Salt Stress; Tomatoen_US
dc.subjectOne-Zinc-Finger; Gene-Expression; Dna-Binding; Arabidopsis; Family; Divergence; Prediction; Tolerance; Evolution; Insightsen_US
dc.titleGenome-wide identification of the VOZ transcription factors in tomato (Solanum lycopersicum): their functions during fruit ripening and their responses to salinity stressen_US
dc.typeArticleen_US

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