Characterization of the Experimentally Observed Clustering of VEGF Receptors
Yükleniyor...
Dosyalar
Tarih
2018
Dergi Başlığı
Dergi ISSN
Cilt Başlığı
Yayıncı
Springer-Verlag Berlin
Erişim Hakkı
info:eu-repo/semantics/closedAccess
Özet
Cell membrane-bound receptors control signal initiation in many important cellular signaling pathways. In many such systems, receptor dimerization or cross-linking is a necessary step for activation, making signaling pathways sensitive to the distribution of receptors in the membrane. Microscopic imaging and modern labeling techniques reveal that certain receptor types tend to co-localize in clusters, ranging from a few to tens, and sometimes hundreds of members. The origin of these clusters is not well understood but they are likely not the result of chemical binding. Our goal is to build a simple, descriptive framework which provides quantitative measures that can be compared across samples and systems, as groundwork for more ambitious modeling aimed at uncovering specific biochemical mechanisms. Here we discuss a method of defining clusters based on mutual distance, applying it to a set of transmission microscopy images of VEGF receptors. Preliminary analysis using standard measures such as the Hopkins' statistic reveals a compelling difference between the observed distributions and random placement. A key element to cluster identification is identifying an optimal length parameter L*. Distance based clustering hinges on the separation between two length scales: the typical distance between neighboring points within a cluster vs. the typical distance between clusters. This provides a guiding principle to identify L* from experimentally derived cluster scaling functions. In addition, we assign a geometric shape to each cluster, using a previously developed procedure that relates closely to distance based clustering. We applied the cluster [support] identification procedure to the entire data set. The observed particle distribution results are consistent with the random placement of receptors within the clusters and, to a lesser extent, the random placement of the clusters on the cell membrane. Deviations from uniformity are typically due to large scale gradients in receptor density and/or the emergence of "megaclusters" that are very likely the expression of a different biological function than the one behind the emergence of the quasi-ubiquitous small scale clusters.
Açıklama
16th International Conference on Computational Methods in Systems Biology (CMSB) -- SEP 12-14, 2018 -- Masaryk Univ, Fac Informat, Brno, CZECH REPUBLIC
Wester, Michael/0000-0002-3520-7605
WOS: 000453218400005
Wester, Michael/0000-0002-3520-7605
WOS: 000453218400005
Anahtar Kelimeler
Membrane receptors, Clustering, Hierarchical clustering, VEGF
Kaynak
Computational Methods In Systems Biology (Cmsb 2018)
WoS Q Değeri
N/A
Scopus Q Değeri
Q3
Cilt
11095
