GENETIC DIVERSITY AND PHYLOGENETIC ANALYSES OF TURKISH RICE VARIETIES REVEALED BY ISSR MARKERS AND CHLOROPLAST trnL-F REGION

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dc.contributor.authorFiliz, Ertuğrul
dc.contributor.authorUras, Mehmet Emin
dc.contributor.authorÖzyiğit, İbrahim İlker
dc.contributor.authorŞen, Uğur
dc.contributor.authorGüngör, Hüseyin
dc.date.accessioned2020-05-01T12:10:11Z
dc.date.available2020-05-01T12:10:11Z
dc.date.issued2018
dc.departmentDÜ, Çilimli Meslek Yüksekokulu, Bitkisel ve Hayvansal Üretim Bölümüen_US
dc.descriptionGungor, Huseyin/0000-0001-6708-6337;en_US
dc.descriptionWOS: 000455562400052en_US
dc.description.abstractA set of 17 Turkish rice (Oryza sativa L.) varieties (TRVs) were characterized using inter simple sequence repeat (ISSR) markers to study genetic diversity. Also, the sequences of trnL((UAA))-F-(GAA) intergenic spacer (IGS) regions were used to evaluate the phylogenetic relationships of TRVs. According to ISSR data, the observed number of alleles (Na), effective number of alleles (Ne), Nei's gene diversity (h), Shannon's information index (I), and overall polymorphism were found as 1.62, 1.38, 0.22, 0.32, and 61.7%, respectively. The genetic distance values were identified between 1.732and 4.583, and replicon size varied from 200 bp to 1600 bp. The ISSR-UPGMA (unweighted pair group method with arithmetic mean) similarity tree and PCA (principal component analysis) exhibited different cluster topologies based on pedigree. All trnL-F regions were found as 306 bp in length, and GC content was found between 34.31% and 34.97%. The nucleotide diversities were found as pi: 0.00954 and theta: 0.03595, while Tajima's D was found as -0.382. The phylogenetic analyses revealed that trnL-F sequences are effective molecular tools in resolving phylogenetic relationships. Consequently, our findings could be useful in planning future Turkish rice breeding strategies for general rice germplasm improvement.en_US
dc.identifier.endpage8358en_US
dc.identifier.issn1018-4619
dc.identifier.issn1610-2304
dc.identifier.issue12en_US
dc.identifier.startpage8351en_US
dc.identifier.urihttps://hdl.handle.net/20.500.12684/6069
dc.identifier.volume27en_US
dc.identifier.wosWOS:000455562400052en_US
dc.identifier.wosqualityQ4en_US
dc.indekslendigikaynakWeb of Scienceen_US
dc.language.isoenen_US
dc.publisherParlar Scientific Publications (P S P)en_US
dc.relation.ispartofFresenius Environmental Bulletinen_US
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanıen_US
dc.rightsinfo:eu-repo/semantics/closedAccessen_US
dc.subjectOryza sativaen_US
dc.subjectriceen_US
dc.subjectgenetic diversityen_US
dc.subjecttrnL-Fen_US
dc.subjectISSRen_US
dc.titleGENETIC DIVERSITY AND PHYLOGENETIC ANALYSES OF TURKISH RICE VARIETIES REVEALED BY ISSR MARKERS AND CHLOROPLAST trnL-F REGIONen_US
dc.typeArticleen_US

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