Genome-wide analysis of IQ67 domain (IQD) gene families in Brachypodium distachyon

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dc.contributor.authorFiliz, Ertuğrul
dc.contributor.authorTombuloğlu, Hüseyin
dc.contributor.authorÖzyiğit, İbrahim İlker
dc.date.accessioned2020-05-01T12:10:12Z
dc.date.available2020-05-01T12:10:12Z
dc.date.issued2013
dc.departmentDÜ, Çilimli Meslek Yüksekokulu, Bitkisel ve Hayvansal Üretim Bölümüen_US
dc.descriptionTombuloglu, Huseyin/0000-0001-8546-2658; Filiz, Ertugrul/0000-0001-9636-6389; Ozyigit, Ibrahim Ilker/0000-0002-0825-5951en_US
dc.descriptionWOS: 000330275800007en_US
dc.description.abstractIn plants, Ca2+ concentration is important for the regulation of developmental processes and responses against biotic and abiotic stress factors. The eukaryotic Ca2+ binding protein calmodulin (CaM: CALcium MODULating protelN) was found in Arabidopsis which contains a characteristic plant-specific IQ67 (Ile, Glu) domain (IQD). In this study, a genome wide analysis was performed in Bracyhpodium distachyon to identify IQD genes. Using several bioinformatics tools, we determined 23 BdIQD genes which were distributed on all chromosomes and the highest gene number was detected on chromosome 2 including 12 IQD genes. 22 of the predicted proteins were considered to be basic proteins. Gene duplication analysis revealed that 8 of 23 BdIQD genes were involved in duplication event, either segmental or tandem. Phylogenetic analysis showed that two main groups were observed in joined tree with rice and Arabidopsis. Especially, monocot species (Brachypodium and rice) were grouped together with the highest bootstrap value (100%), whereas monocot and dicot species (Arabidopsis) were clustered with lower bootstrap values. Digital expression profile analysis indicated that the most of the BdIQD genes were expressed in leaves (8 genes) and flowers (6 genes), respectively. In conclusion, this comparative genomics analysis contributes to understanding IQD genes in grass species.en_US
dc.identifier.endpage432en_US
dc.identifier.issn1836-0661
dc.identifier.issn1836-3644
dc.identifier.issue6en_US
dc.identifier.startpage425en_US
dc.identifier.urihttps://hdl.handle.net/20.500.12684/6078
dc.identifier.volume6en_US
dc.identifier.wosWOS:000330275800007en_US
dc.identifier.wosqualityQ3en_US
dc.indekslendigikaynakWeb of Scienceen_US
dc.language.isoenen_US
dc.publisherSouthern Cross Publen_US
dc.relation.ispartofPlant Omicsen_US
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanıen_US
dc.rightsinfo:eu-repo/semantics/closedAccessen_US
dc.subjectIQD genesen_US
dc.subjectIQ67 domainen_US
dc.subjectcalmodulin (CAM)en_US
dc.subjectBrachypodiumen_US
dc.subjectgenome wide analysisen_US
dc.titleGenome-wide analysis of IQ67 domain (IQD) gene families in Brachypodium distachyonen_US
dc.typeArticleen_US

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