Dissecting a co-expression network of basic helix-loop-helix (bHLH) genes from phosphate (Pi)-starved soybean (Glycine max)

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dc.contributor.authorFiliz, Ertuğrul
dc.contributor.authorVatansever, Recep
dc.contributor.authorÖzyiğit, İbrahim İlker
dc.date.accessioned2020-04-30T13:32:19Z
dc.date.available2020-04-30T13:32:19Z
dc.date.issued2017
dc.departmentDÜ, Çilimli Meslek Yüksekokulu, Bitkisel ve Hayvansal Üretim Bölümüen_US
dc.description.abstractIn this work, a co-expression network-based approach was employed in analysis of basic helix-loop-helix (bHLH) transcription factor genes in soybean (Glycine max). bHLHs as regulatory agents modulate many complex associations related with regular metabolic functions and various stress factors. Co-expression networks are versatile resources to understand complex associations from functional aspects. Using a microarray data from phosphate (Pi)-starved soybean, a co-expression network of bHLH genes was constructed. A network was established with 253 nodes (bHLH genes) interconnecting 1763 edges (association) and then the network was dissected into 13 distinct clusters to extensively investigate the correlations. Each cluster was individually analyzed with emphasis on seed genes, which could be used as marker/reference genes in development of plant lines with enhanced stress tolerance. The seed genes were involved in very diverse metabolic processes, including stress modulation, metal homeostasis, hormone response and developmental roles. Our network-based clustering approach provides new insight in understanding many uncharacterized plant bHLHs. © 2016 Elsevier B.V.en_US
dc.identifier.doi10.1016/j.plgene.2016.12.001en_US
dc.identifier.endpage25en_US
dc.identifier.issn2352-4073
dc.identifier.scopusqualityQ2en_US
dc.identifier.startpage19en_US
dc.identifier.urihttps://dx.doi.org/10.1016/j.plgene.2016.12.001
dc.identifier.urihttps://hdl.handle.net/20.500.12684/230
dc.identifier.volume9en_US
dc.indekslendigikaynakScopusen_US
dc.language.isoenen_US
dc.publisherElsevier B.V.en_US
dc.relation.ispartofPlant Geneen_US
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanıen_US
dc.rightsinfo:eu-repo/semantics/closedAccessen_US
dc.subjectbHLH; Cis-element; Cluster; Co-expression; Gene module; Seed genes; Soybeanen_US
dc.titleDissecting a co-expression network of basic helix-loop-helix (bHLH) genes from phosphate (Pi)-starved soybean (Glycine max)en_US
dc.typeArticleen_US

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