Comparative analyses of pathogenesis-related protein-10 (PR10) in plants

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dc.contributor.authorÖzyiğit, İbrahim İlker
dc.contributor.authorVatansever, Recep
dc.contributor.authorFiliz, Ertuğrul
dc.date.accessioned2020-04-30T22:41:04Z
dc.date.available2020-04-30T22:41:04Z
dc.date.issued2017
dc.departmentDÜ, Çilimli Meslek Yüksekokulu, Bitkisel ve Hayvansal Üretim Bölümüen_US
dc.descriptionWOS: 000425580800024en_US
dc.description.abstractIn the present study, we have comparatively analyzed PR10 genes and proteins from 28 plant species in order to understand the relationship (conservation or divergence) between different PR1Os in various plant species. In analyzed species, PR10 proteins were found to be small (157-166 as long and 14.3-18.2 kDa weight) and acidic (4.69-6.17) in nature. Besides, PR10 sequences had highly conserved GxGGxG motif (P-loop motif) structure at various positions. These positional variations in glycine (Gly) residues may become the result of substitution, deletions and insertions occurred during the course of PR10 evolution. In general, primary sequences of PR1Os in various plant species may have a well conserved structure. Digital expression data of tomato and maize showed that expression of PR10 genes may significantly increase in plant parts (root, lateral root and root tips) where it is more open to the mechanical perturbation and pathogenic attack, supporting the involvement of PR10 in plant defense. In phylogenetic tree, a clear monocot/polycot and dicot separation were observed. This separation could have been arising from the well conserved structure of PR10 genes of monocots and polycots than dicots. All modeled species contained the same number of beta-strands (seven) but alpha-helices varied between 2 and 4 depending on species. The results of this study will provide a theoretical reference regarding the primary, secondary and tertiary structure of PR1Os in various plant species and will support the future studies that aiming to characterize the pathogenesis-related (PR) proteins.en_US
dc.identifier.endpage464en_US
dc.identifier.issn0972-5849
dc.identifier.issn0975-0967
dc.identifier.issue3en_US
dc.identifier.startpage456en_US
dc.identifier.urihttps://hdl.handle.net/20.500.12684/3115
dc.identifier.volume16en_US
dc.identifier.wosWOS:000425580800024en_US
dc.identifier.wosqualityQ4en_US
dc.indekslendigikaynakWeb of Scienceen_US
dc.language.isoenen_US
dc.publisherNatl Inst Science Communication-Niscairen_US
dc.relation.ispartofIndian Journal Of Biotechnologyen_US
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanıen_US
dc.rightsinfo:eu-repo/semantics/closedAccessen_US
dc.subjectIn silicaen_US
dc.subjectpathogenesis-related protein 10en_US
dc.subject3D structureen_US
dc.subjectphylogeneticen_US
dc.subjectpolycoten_US
dc.subjectdivergenceen_US
dc.titleComparative analyses of pathogenesis-related protein-10 (PR10) in plantsen_US
dc.typeArticleen_US

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